Some useful (free) sites for CADD:
1. Powerful Molecule Viewers
COOT (study the crystal coordinates)
2. Ligand Binding Site Finder :
3. Structure Based Molecule Design
4. Analytical softwares
5. Docking Softwares
6. Molecular Mechanics
7. Protein Structure Modelling
WhatIf Homology Modelling Web Server
Protein Fold recognition at Phyre
1Dto3D prediction using HMMSTR/Rosetta
8. Loop Modelling
9. Protein Electrostatics
Protein Continuum Electrostatics (PCE)
10. Model Check/Verification
Template/Protein Structure Check
2D Graphics check (incl. Ramachandran plots)
11. Small Compound Databases
12. Graphical Tools
PMG: the Protein Movie Generator
This list is far from being complete. Should your tool be published here as well? Please notify us!